Dr. Bobik
Iowa State University January — May 2019
Extremophile Planococcus Halocryophilus
Key words: Extremophiles, origins of life, adaptation, astrobiology
My keen curiosity for extremophiles began with a course taught by Dr. Thomas Bobik titled Prokaryotic Diversity and Ecology, where I was introduced to a plethora of distinctive metabolic, phylogenetic, and adaptive features of various single-celled organisms. The graduate cross-listed course material examined the mechanisms of which prokaryotes use to overcome the inconceivable challenges of microbial life.
As a final presentation, I taught two dozen students about the arctic permafrost bacterium, Planococcus halocryophilus. This cryoenvironment extremophile of Arctic ice is characterized as both halophilic and psychrophilic; thriving in an environment of high salinity (up to 18% NaCl) and extremely low temperature (-15°C). I examined the genotypic and resulting phenotypic adaptation features of P. halocryophilus to survive in this environment primarily through a 2013 study by N. Mykytczuk et. al. According to their research of over 200 Canadian high arctic isolates screened, the known cryophilic bacteria were also halophilic, indicating subzero growth coincides with osmotolerance.
I continued to research related adaptations that permit the organism to reside and reproduce, overcoming barriers such as: decreased membrane fluidity, slowed transcription and denaturation rates, and the increased risk of intracellular ice formation. A key finding within the sequenced genome was a significant redundancy of genes— approximately 17%— that expressed cold and osmotic-specific adaptive mechanisms. These genes have been associated with increased fitness through selective upregulation, altered amino acid distribution, and solute binding. The high genomic redundancy assures a buffer for mutations among the decreased translation efficiency, and the continued production of ice-binding proteins to regulate internal crystallization.
This investigation into the Mykytczuk study on P. halocyophilus forms a foundation for my prospective doctoral studies of understanding the genetic components attributed to organismal survival. My interest in the origins and survivability of lifeforms has only progressed since, by pondering the limits of life, breadth of adaptability, and seeing the impact this knowledge can have on humanity.
Future Directions— Graduate School
This course directly impacted my career intentions and has guided foundational questions I plan to explore during a prospective graduate program.
While genetic evolution is the underpinning of all modern and understood organisms, it is still unclear how the extreme environments on Earth are tolerated. Environments such as the Dead Sea and seafloor hydrothermal vent systems were considered barren just a few decades ago; however, we know now that they are teeming with life. Organisms that can sustain a variety of extreme conditions are termed extremophiles and inhabit intense cold (psychro), heat (thermo), salt (halo), and pressure biomes. Understanding the components attributed to their survival has spawned theories about the origins of life on Earth, and the conditions in which life might be found across the universe.
My ideal research topic would be an intersectional perspective on astrobiology to investigate key mass spectrometry peak analyses of extremophile proteins. By testing and identifying signals of biological activity (biosignatures), I hope to accumulate information on ways to characterize detection methods of extremophiles that pose a plausible microbiological world outside Earth.
The NASA spacecraft, Europa Clipper, is set to launch in 2024 to reach and explore the Jovian system. The purpose of this mission is to study the origin, evolution, distribution, and future of life in the universe. Preparing the analysis of suspected biosignatures of psychrophiles that we have access to on Earth will expedite the interpretation of data anticipated to begin in 2030— when the Europa Clipper enters Jupiter’s orbit. I hope the research I do in the proceeding 5-10 years will be useful in the coming decades so that when the data from examining exoplanets and icy-ocean moons arrives, we as a society will be ready to anticipate potential avenues of discovery and their meaning.